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3D

Blender is an integrated suite of tools enabling the rapid creation of a broad range of 3D content. Subcategory: Frame Rendering

YafRay is a powerful raytracer, enabling users to create fantastic images and animations of a photorealistic quality. Subcategory: Frame Rendering

Computational Mathematics

FreeMat is a free environment for rapid engineering and scientific prototyping and data processing. Subcategory: Numerical Computing

GAMS is specifically designed for modeling linear, nonlinear and mixed integer optimization problems. Subcategory: Numerical Computing

GAP —Groups, Algorithms, Programming— is a system for computational discrete algebra.

GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. Subcategory: Precision Arithmetic

GNU Linear Programming Kit is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. Subcategory: Linear Programming

ParMETIS implements a variety of algorithms for partitioning unstructured graphs and meshes and for computing fill-reducing orderings of sparse matrices. Subcategory: Numerical Analysis

ParMGridGen is a highly optimized serial and parallel library for obtaining a sequence of successive coarse grids that are well suited for geometric multigrid methods.

R Project is a language and environment for statistical computing and graphics. Subcategory: Solver

SuperLU_DIST is a scalable distributed-memory sparse direct solver for unsymmetric linear systems. Subcategory: Quantum Mechanics

Computer Aided Engineering

Calculix is a free software nonlinear three-dimensional finite element program for structural applications.Subcategory: Finite Element Analysis

deal.II is a C++ program library targeted at adaptive finite elements and error estimation. Subcategory: Finite Element Analysis

ElmerSolver is a computational tool for multi-physics problems. Subcategory: Finite Element Analysis

freeFEM is an open source application based on the finite element method (FEM) for solving partial differential equations (PDE) easily. Subcategory: Finite Element Analysis

Impact is an explicit Finite Element program suite that simulates dynamic impact events. Subcategory: Finite Element Analysis

OFELI is a library of finite element C++ classes for the multipurpose development of finite element software. Subcategory: Finite Element Analysis

OOFEM is free finite element code with an object-oriented architecture for solving mechanical, transport and fluid mechanics problems.Subcategory: Finite Element Analysis

Financial Services

CDOSheet allows you to price and risk manage complex deals quickly and easily using built-in, grid-enabled analytics. Subcategory: Risk Analysis

General

Enzo is an adaptive mesh refinement (AMR), grid-based hybrid code (hydro + N-Body), which is designed to do simulations of cosmological structure formation. Subcategory: Cosmological Structure Formation

FDS is a computer program for modeling fire and smoke flow. Subcategory: Environmental Modeling

ngspice is a mixed-level/mixed-signal circuit simulator. Subcategory: Circuit Simulation

WRF is a next-generation mesocale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. Subcategory: Climate and Weather Modeling

Life Sciences

Amber PMEMD-parallel is a reimplementation of a subset of sander functionality that has been written with the major goal of improving the performance of the most frequently used methods of sander. Subcategory: Computational Chemistry

ARMS performs the optimal RMS superposition of two rigid conformers, provided that the pairwise correspondence is known or implicit. Subcategory: Computational Chemistry

ASV analytical calculation of van der Waals surfaces and volumes. Subcategory: Computational Chemistry

BLAST finds regions of local similarity between nucleotide or protein sequences. Subcategory: Sequence Analysis

ClustalW is a fully automatic program for global multiple alignment of DNA and protein sequences. Subcategory: Bioinformatics

CSR the Combined SDM/RMS algorithm for spatial alignment of two molecules. Subcategory: Computational Chemistry

DOG solves the geometric docking problem for planar and spatial sets. Subcategory: Computational Chemistry

eHiTS is used for fast, flexible docking of whole or partial structures to target receptors. Subcategory: Computational Chemistry

EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology user community. Subcategory: Sequence Analysis

FASTA finds regions of local similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Subcategory: Bioinformatics

fastDNAml is a program for estimating maximum likelihood phylogenetic (evolutionary lines of descent) trees from nucleotide sequences. Subcategory: Computational Chemistry

GROMACS is an engine that performs molecular dynamics simulations and energy minimization. Subcategory: Bioinformatics

HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis. Subcategory: Sequence Analysis

MPQC computes properties of atoms and molecules. Subcategory: Quantum Chemistry

NAMD is a parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. Subcategory: Molecular Dynamics

PETSc is a suite of data structures and routines for the scalable solution of scientific applications modeled by partial differential equations.

POP computes optimal partitions. Subcategory: Computational Chemistry

Q-Chem is a comprehensive ab initio quantum chemistry package designed for problems of all sizes. Subcategory: Computational Chemistry

QCM calculates CHI (normalized parity divergence), DSI (whether the set flattens when immersed in higher dimensions) and COR (graph theoretic symmetry elements). Subcategory: Computational Chemistry

Rational Numbers Assign can also be used to assign molecular fragments to a known or proposed compound. Subcategory: Computational Chemistry

Rational Numbers Partition is a tool for presenting possibilities to a scientist in a visual format and for searching molecular structure databases.Subcategory: Computational Chemistry

Rational Numbers FragSearch software is designed to assist scientists in identifying small organic compounds from accurate-mass fragmentation data. Subcategory: Computational Chemistry

Readseq is an open source biosequence conversion library. Subcategory: Transformation

T-Coffee is an open source multiple sequence alignment program. Subcategory: Sequence Analysis

ZEUS-MP/2 is a computational fluid dynamics code for the simulation of astrophysical phenomena, based on ZEUS-3D and parallelized using the MPI message-passing library. Subcategory: Computational Fluid Dynamics

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	Select an Application Log in to the Sun Grid compute utility. Go to the Jobs Catalog page to select the application you wish to use. If the application requires a license token, contact the application provider for a license.


			Upload Create archives on your local machine containing your data and optional license file, if one has been issued for this application. Create corresponding Resources on Sun Grid and upload the archives.


					Create Job Define a Job at the Sun Grid compute utility that specifies your Resources for the Job Template you selected.


							Run Job Submit the Job to Sun Grid for execution. Make sure you have sufficient CPU-hour credits in your account.


									Download Results Select your completed run at the Sun Grid compute utility and download results and log files.


	Build and Debug Make sure your application works correctly on the Solaris 10 OS (x64) under control of a Solaris 10 OS shell script. For help parallelizing your application, see resources.


			Upload Log in to the Sun Grid compute utility. Create Resources and then upload the corresponding archives containing your application and data.


	Build Application Test your application on Sun Grid. You need to build the application locally, upload the application and data, and verify the results.


			Create Job Template Define a Job template from existing Jobs to list your application in the Job Catalog. You may choose to charge other users by selecting the Digital Entitlement Token required field.


					Submit for Approval Submit your Job template for approval from the Sun Grid administrator.


							Share Your Application Select Share from the list of approved Job templates in Workflow Items. You can choose to un-share applications at any time.


									Sell Tokens and Track Usage Create and sell Digital Entitlement Tokens. You can track usage of your application on a per-user basis.