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 Application Catalog |
HMMER
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HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.
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Category: Life Sciences
Sub Category: Sequence Analysis
Publisher: Sean Eddy, Howard Hughes Medical Institute
Date Published: October 3, 2003
Version: 2.3.2
Pricing:
License: GNU General Public License
Runtime: $1/CPU-hr.
What is a CPU-hr.?
A CPU-hr. is the aggregate CPU time spent across all machines, rounded up to the nearest hour (e.g., a task running on 1,000 CPUs for one minute = 1,000 CPU minutes or approximately 17 CPU hours, costing you only $17).
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Key Features
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- HMMER searches sequence databases to find and/or align homologues of the sequence family
- Software autodetects users' alignment file formats
- Enables users to look for known domains in a query sequence, by searching a single sequence against a library of HMMs |
Description |
Profile hidden Markov models (profile HMMs) can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis. |
Technical Information |
Developer Web Page |
Publisher Information |
Sean Eddy
Howard Hughes Medical Institute
Washington University School of Medicine
660 South Euclid Avenue, Box 8232
Saint Louis, Missouri 63110, USA
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Pricing and Payment Information |
License: GNU General Public License
Order Information: N/A |
Support: |
Mailing List Support: N/A
Email Support: N/A
Phone Support: N/A |
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